NGPhylogeny.fr

Input data

Fasta format

Alignment Curation

BMGE

cleaning aligned sequences

Choose a file or Paste content
(Fasta format with more than 3 sequences)

Blast runs Files in session

Sequence Coding

matrix

Name of the PAM matrix [ 1-500 ]

matrix

Estimated matrix BLOSUM

matrix

Estimated matrix BLOSUM

Estimated matrix BLOSUM (if protein)

Name of the PAM matrix [ 1-500 ] (if dna)

Estimated matrix BLOSUM (if protein)

Name of the PAM matrix [ 1-500 ] (if dna)

Sliding Windows Size

sliding window size (must be odd; ranges from 1 to alignment length; if set to 1, then entropy-like values are not smoothed; default: 3)

Maximum entropy threshold

Gap Rate cut-off [ 0-1 ]

Minimum Block Size