NGPhylogeny.fr

Workflow skeleton

Input data Fasta format

Multiple Alignment MAFFT Multiple alignment program for amino acid or nucleotide sequences

Alignment Curation BMGE cleaning aligned sequences

Tree Inference FastME Distance-based inference of phylogenetic trees

Tree Rendering Newick Display Display a phylogenetic tree as SVG

Input data Fasta format

Multiple Alignment MAFFT Multiple alignment program for amino acid or nucleotide sequences

Alignment Curation BMGE cleaning aligned sequences

Tree Inference PhyML Phylogeny software based on the maximum-likelihood

Tree Rendering Newick Display Display a phylogenetic tree as SVG

Input data Fasta format

Multiple Alignment MAFFT Multiple alignment program for amino acid or nucleotide sequences

Alignment Curation BMGE cleaning aligned sequences

Tree Inference PhyML+SMS Maximum likelihood-based inference of phylogenetic trees with Smart Model Selection

Tree Rendering Newick Display Display a phylogenetic tree as SVG

Input data Fasta format

Multiple Alignment MAFFT Multiple alignment program for amino acid or nucleotide sequences

Alignment Curation BMGE cleaning aligned sequences

Tree Inference FastTree FastTree : Infers approximately-maximum-likelihood phylogenetic trees from alignments of nucleotide or protein sequences.

Tree Rendering Newick Display Display a phylogenetic tree as SVG