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FastTree 2.1.9

Specify if the aligned sequences are nucleotide or protein sequences

Precompute file containning sequence description (dna or protein)

Non-uniformity of evolutionary rates among sites may be modeled by using a discrete Gamma distribution

Compute branch support

Must be a positive integer


  • Price, M. N. and Dehal, P. S. and Arkin, A. P.(2009). FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix . Molecular Biology and Evolution doi
  • Price, Morgan N. and Dehal, Paramvir S. and Arkin, Adam P.(2010). FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments . PLoS ONE doi