Amino acid or nucleotide sequences in FASTA format.
Run mafft with pre-defined input parameters. Specification of these parameters can be found in the help section.
Distance method must be chosen regarding your data
Valid with 6mer distance
1000 for maximum quality
Offset value, which works like gap extension penalty, for group-to-group alignment. For E-INS-i, 0 is recommended to allow large gaps
1.53 default value
Generate reverse complement sequences, as necessary, and align them together with the remaining sequences
Usefull only for amino acids