NGPhylogeny.fr

Lefort, Vincent and Longueville, Jean-Emmanuel and Gascuel, Olivier. SMS: Smart Model Selection in PhyML. Molecular Biology and Evolution, 34:2422–2424

Lemoine, F. and Domelevo Entfellner, J.-B. and Wilkinson, E. and Correia, D. and Dávila Felipe, M. and De Oliveira, T. and Gascuel, O.. Renewing Felsenstein’s phylogenetic bootstrap in the era of big data. Nature, 556:452–456

Guindon, S. and Dufayard, J. F. and Lefort, V. and Anisimova, M. and Hordijk, W. and Gascuel, O.. New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0. Systematic Biology, 59:307–321