NGPhylogeny.fr

Noisy 1.5.12.1

Source file

Fasta format

Sequence Coding

Information file

Precompute file containning sequence description (dna or protein)

cut-off [ 0-1 ]

Columns with a score below the cut-off are removed from the output alignment.

Distance method used by Neighbor-Net

Matrix file (Optional)

Set list of missing chars

Missing chars list

Ordering method

NeighborNet

QNet

Sample INT random permutation

List of index MSA ordering

All permutations

Number of random permutation

Comma-seperated string of integer

Constant columns in output alignment?

Count gap symbol as character state?

Running average over X columns

Calculate a running average over the reliability score of X columns and use this smoothed values to remove unreliable columns from the MSA

Perform INT random shuffles per column of the MSA