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BMGE 1.12_1

Source file

Fasta format

Sequence Coding

matrix

Name of the PAM matrix [ 1-500 ]

matrix

Estimated matrix BLOSUM

matrix

Estimated matrix BLOSUM

Estimated matrix BLOSUM (if protein)

Name of the PAM matrix [ 1-500 ] (if dna)

Estimated matrix BLOSUM (if protein)

Name of the PAM matrix [ 1-500 ] (if dna)

Sliding Windows Size

sliding window size (must be odd; ranges from 1 to alignment length; if set to 1, then entropy-like values are not smoothed; default: 3)

Maximum entropy threshold

Gap Rate cut-off [ 0-1 ]

Minimum Block Size