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NGPhylogeny.fr

FastME 2.1.6.3_1
Fasta/Phylip Alignment or Matrix file
newick format
By default, frequencies are globally counted from the nucleotides alignment or defined by the proteic substitution model. By checking the box, frequencies are pairwise estimated by counting the nucleotides or estimated by counting the amino-acids in the alignment.
(NNI) Nearest Neighbor Interchanges,(SPR) Subtree Pruning and Regrafting

References to cite